HL_7M5D_087

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7M5D|1|2|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M5D_087 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3793

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7M5D|1|2|C|840
7M5D|1|2|C|841
7M5D|1|2|U|842
7M5D|1|2|U|843
7M5D|1|2|G|844
7M5D|1|2|A|845
7M5D|1|2|G|846

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain w

30S ribosomal protein S18