HL_7M5D_098

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

7M5D|1|2|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M5D_098 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1205

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7M5D|1|2|G|1356
7M5D|1|2|A|1357
7M5D|1|2|U|1358
7M5D|1|2|C|1359
7M5D|1|2|A|1360
7M5D|1|2|G|1361
7M5D|1|2|A|1362
7M5D|1|2|A|1363
7M5D|1|2|U|1364
7M5D|1|2|G|1365
7M5D|1|2|C|1366

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain n

30S ribosomal protein S9

Chain o

30S ribosomal protein S10

Chain s

30S ribosomal protein S14