HL_7MD7_061

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_061 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.0959

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7MD7|1|1A|C|2551
7MD7|1|1A|2MU|2552
7MD7|1|1A|G|2553
7MD7|1|1A|U|2554
7MD7|1|1A|U|2555
7MD7|1|1A|C|2556
7MD7|1|1A|G|2557

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains