HL_7MD7_064

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_064 not in the Motif Atlas

Homologous match to HL_7RQB_065

Geometric discrepancy: 0.049

The information below is about HL_7RQB_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53171.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

18

Unit IDs

7MD7|1|1A|C|2701
7MD7|1|1A|U|2702
7MD7|1|1A|C|2703
7MD7|1|1A|C|2704
7MD7|1|1A|A|2705
7MD7|1|1A|G|2706

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17