HL_7MD7_145

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

7MD7|1|2A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_145 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.0808

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

7MD7|1|2A|C|1631
7MD7|1|2A|A|1631|||A
7MD7|1|2A|A|1632
7MD7|1|2A|G|1633
7MD7|1|2A|A|1634
7MD7|1|2A|G|1635

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains