HL_7MD7_190

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_190 not in the Motif Atlas

Homologous match to HL_6CZR_086

Geometric discrepancy: 0.0971

The information below is about HL_6CZR_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7MD7|1|2a|C|689
7MD7|1|2a|G|690
7MD7|1|2a|G|691
7MD7|1|2a|U|692
7MD7|1|2a|G|693
7MD7|1|2a|A|694
7MD7|1|2a|A|695
7MD7|1|2a|A|696
7MD7|1|2a|U|697
7MD7|1|2a|G|698

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2g

30S ribosomal protein S7

Chain 2k

30S ribosomal protein S11

Chain 2y

Ribosome-associated inhibitor A