HL_7MD7_192

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7MD7|1|2a|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_192 not in the Motif Atlas

Homologous match to HL_6CZR_088

Geometric discrepancy: 0.1438

The information below is about HL_6CZR_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7MD7|1|2a|G|786
7MD7|1|2a|A|787
7MD7|1|2a|U|788
7MD7|1|2a|U|789
7MD7|1|2a|A|790
7MD7|1|2a|G|791
7MD7|1|2a|A|792
7MD7|1|2a|U|793
7MD7|1|2a|A|794
7MD7|1|2a|C|795
7MD7|1|2a|C|796

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2y

Ribosome-associated inhibitor A