HL_7MDZ_010

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

7MDZ|1|5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_010 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1547

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7MDZ|1|5|G|230
7MDZ|1|5|U|231
7MDZ|1|5|G|232
7MDZ|1|5|U|233
7MDZ|1|5|G|234
7MDZ|1|5|A|235
7MDZ|1|5|G|236
7MDZ|1|5|G|237
7MDZ|1|5|C|238

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4

Chain Y

uL24