HL_7MDZ_016
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAGACCCG
- Length
- 9 nucleotides
- Bulged bases
- 7MDZ|1|5|A|966, 7MDZ|1|5|C|967
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MDZ_016 not in the Motif Atlas
- Geometric match to HL_6D12_002
- Geometric discrepancy: 0.1613
- The information below is about HL_6D12_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
7MDZ|1|5|C|962
7MDZ|1|5|G|963
7MDZ|1|5|A|964
7MDZ|1|5|G|965
7MDZ|1|5|A|966
7MDZ|1|5|C|967
7MDZ|1|5|C|968
7MDZ|1|5|C|969
7MDZ|1|5|G|970
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- 60S ribosomal protein L7
Coloring options: