3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAGACCCG
Length
9 nucleotides
Bulged bases
7MDZ|1|5|A|966, 7MDZ|1|5|C|967
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MDZ_016 not in the Motif Atlas
Geometric match to HL_6D12_002
Geometric discrepancy: 0.1613
The information below is about HL_6D12_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.6
Basepair signature
cWW-F-F
Number of instances in this motif group
22

Unit IDs

7MDZ|1|5|C|962
7MDZ|1|5|G|963
7MDZ|1|5|A|964
7MDZ|1|5|G|965
7MDZ|1|5|A|966
7MDZ|1|5|C|967
7MDZ|1|5|C|968
7MDZ|1|5|C|969
7MDZ|1|5|G|970

Current chains

Chain 5
28S rRNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain E
60S ribosomal protein L6
Chain F
60S ribosomal protein L7

Coloring options:


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