HL_7MDZ_016

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

7MDZ|1|5|A|966, 7MDZ|1|5|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_016 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.1613

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7MDZ|1|5|C|962
7MDZ|1|5|G|963
7MDZ|1|5|A|964
7MDZ|1|5|G|965
7MDZ|1|5|A|966
7MDZ|1|5|C|967
7MDZ|1|5|C|968
7MDZ|1|5|C|969
7MDZ|1|5|G|970

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7