HL_7MDZ_017

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCC

Length

4 nucleotides

Bulged bases

7MDZ|1|5|U|1179, 7MDZ|1|5|C|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_017 not in the Motif Atlas

Geometric match to HL_8CRE_021

Geometric discrepancy: 0.3801

The information below is about HL_8CRE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7MDZ|1|5|G|1178
7MDZ|1|5|U|1179
7MDZ|1|5|C|1180
7MDZ|1|5|C|1183

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Ribosomal_L18_c domain-containing protein

Chain I

60S ribosomal protein L10