HL_7MDZ_021
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MDZ_021 not in the Motif Atlas
- Geometric match to HL_4ENC_001
- Geometric discrepancy: 0.393
- The information below is about HL_4ENC_001
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_77600.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7MDZ|1|5|C|1436
7MDZ|1|5|C|1437
7MDZ|1|5|U|1438
7MDZ|1|5|U|1440
7MDZ|1|5|C|1441
7MDZ|1|5|C|1442
7MDZ|1|5|A|1443
7MDZ|1|5|G|1444
7MDZ|1|5|U|1445
7MDZ|1|5|C|1446
7MDZ|1|5|C|1447
7MDZ|1|5|G|1448
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain F
- 60S ribosomal protein L7
- Chain Q
- Ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
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