HL_7MDZ_025
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 7MDZ|1|5|A|1630, 7MDZ|1|5|G|1633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MDZ_025 not in the Motif Atlas
- Homologous match to HL_5TBW_021
- Geometric discrepancy: 0.1065
- The information below is about HL_5TBW_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7MDZ|1|5|G|1627
7MDZ|1|5|C|1628
7MDZ|1|5|G|1629
7MDZ|1|5|A|1630
7MDZ|1|5|A|1631
7MDZ|1|5|A|1632
7MDZ|1|5|G|1633
7MDZ|1|5|A|1634
7MDZ|1|5|C|1635
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
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