HL_7MDZ_046

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7MDZ|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_046 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0994

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7MDZ|1|5|U|2810
7MDZ|1|5|G|2811
7MDZ|1|5|A|2812
7MDZ|1|5|A|2813
7MDZ|1|5|C|2814
7MDZ|1|5|A|2815
7MDZ|1|5|G|2816

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19