HL_7MDZ_047

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7MDZ|1|5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_047 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1104

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7MDZ|1|5|C|2872
7MDZ|1|5|U|2873
7MDZ|1|5|U|2874
7MDZ|1|5|C|2875
7MDZ|1|5|G|2876
7MDZ|1|5|G|2877

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41

Chain p

eL43