HL_7MDZ_064

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7MDZ|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_064 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.134

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7MDZ|1|5|A|4474
7MDZ|1|5|G|4475
7MDZ|1|5|C|4476
7MDZ|1|5|A|4477
7MDZ|1|5|G|4478
7MDZ|1|5|A|4479
7MDZ|1|5|A|4480
7MDZ|1|5|U|4481

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

eL40