HL_7MDZ_083

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_083 not in the Motif Atlas

Geometric match to HL_5D8H_002

Geometric discrepancy: 0.2443

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7MDZ|1|9|C|196
7MDZ|1|9|U|197
7MDZ|1|9|U|198
7MDZ|1|9|C|199
7MDZ|1|9|G|200
7MDZ|1|9|C|201
7MDZ|1|9|G|202
7MDZ|1|9|G|203

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

eS8