HL_7MDZ_087

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_087 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.2807

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7MDZ|1|9|U|416
7MDZ|1|9|C|417
7MDZ|1|9|A|418
7MDZ|1|9|G|419
7MDZ|1|9|G|420
7MDZ|1|9|G|421

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain JJ

uS4

Chain LL

uS17

Chain WW

uS8

Chain XX

uS12