HL_7MDZ_090

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7MDZ|1|9|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_090 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.4106

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7MDZ|1|9|C|498
7MDZ|1|9|G|499
7MDZ|1|9|A|500
7MDZ|1|9|C|501
7MDZ|1|9|C|502
7MDZ|1|9|C|503
7MDZ|1|9|G|504

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain YY

40S ribosomal protein S24