HL_7MDZ_098

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7MDZ|1|9|U|888, 7MDZ|1|9|U|890, 7MDZ|1|9|G|895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_098 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2853

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7MDZ|1|9|C|884
7MDZ|1|9|U|885
7MDZ|1|9|A|886
7MDZ|1|9|U|887
7MDZ|1|9|U|888
7MDZ|1|9|U|889
7MDZ|1|9|U|890
7MDZ|1|9|G|891
7MDZ|1|9|U|892
7MDZ|1|9|U|893
7MDZ|1|9|G|894
7MDZ|1|9|G|895
7MDZ|1|9|U|896
7MDZ|1|9|U|897
7MDZ|1|9|U|898
7MDZ|1|9|U|899
7MDZ|1|9|C|900
7MDZ|1|9|G|901
7MDZ|1|9|G|902

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain LL

uS17