HL_7MDZ_103

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_103 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1286

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7MDZ|1|9|G|1141
7MDZ|1|9|G|1142
7MDZ|1|9|A|1143
7MDZ|1|9|A|1144
7MDZ|1|9|A|1145
7MDZ|1|9|C|1146

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain WW

uS8

Chain aa

40S ribosomal protein S26