3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCCG
Length
4 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MDZ_109 not in the Motif Atlas
Geometric match to HL_7KI3_001
Geometric discrepancy: 0.1174
The information below is about HL_7KI3_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

7MDZ|1|9|C|1416
7MDZ|1|9|C|1417
7MDZ|1|9|C|1423
7MDZ|1|9|G|1424

Current chains

Chain 9
18S rRNA

Nearby chains

Chain QQ
uS9
Chain TT
eS19

Coloring options:


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