HL_7MDZ_111

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_111 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2042

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7MDZ|1|9|C|1565
7MDZ|1|9|G|1566
7MDZ|1|9|G|1567
7MDZ|1|9|C|1568
7MDZ|1|9|A|1569
7MDZ|1|9|G|1570

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain TT

eS19