3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGCC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MDZ_116 not in the Motif Atlas
Geometric match to HL_8KAH_003
Geometric discrepancy: 0.2659
The information below is about HL_8KAH_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89457.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
2

Unit IDs

7MDZ|1|5|G|758
7MDZ|1|5|G|759
7MDZ|1|5|G|760
7MDZ|1|5|C|904
7MDZ|1|5|C|905

Current chains

Chain 5
28S rRNA

Nearby chains

Chain H
60S ribosomal protein L9
Chain M
60S ribosomal protein L14

Coloring options:


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