HL_7MPI_013

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_013 not in the Motif Atlas

Geometric match to HL_5FJC_003

Geometric discrepancy: 0.1058

The information below is about HL_5FJC_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7MPI|1|A1|C|599
7MPI|1|A1|G|600
7MPI|1|A1|U|601
7MPI|1|A1|A|602
7MPI|1|A1|A|603
7MPI|1|A1|G|604

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AF

60S ribosomal protein L7-A