RNA 3D Hub //

7MPI Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7MPI_0011/A1/38:45No text annotation
homologous
HL_8C3A_001
NA
HL_7MPI_0021/A1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7MPI_0031/A1/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_7MPI_0041/A1/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_7MPI_0051/A1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7MPI_0061/A1/208:212No text annotation
homologous
HL_8C3A_006
NA
HL_7MPI_0071/A1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7MPI_0081/A1/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_7MPI_0091/A1/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_7MPI_0101/A1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7MPI_0111/A1/382:387GNRA
homologous
HL_8C3A_011
NA
HL_7MPI_1241/A1/541:550No text annotation
HL_7MPI_0131/A1/599:604GNRA
geometric
HL_5FJC_003
HL_37824.7
HL_7MPI_1141/A1/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7MPI_0151/A1/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_7MPI_0161/A1/707:712GNRA
homologous
HL_8C3A_016
NA
HL_7MPI_0171/A1/732:737GNRA
geometric
HL_3P22_001
HL_37824.7
HL_7MPI_0181/A1/763:768No text annotation
homologous
HL_8C3A_018
NA
HL_7MPI_0191/A1/844:849GNRA
homologous
HL_8C3A_019
NA
HL_7MPI_1151/A1/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_7MPI_0211/A1/910:918No text annotation
homologous
HL_8C3A_021
NA
HL_7MPI_0221/A1/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_7MPI_0231/A1/1013:1037Externally structured
geometric
HL_8C3A_022
NA
HL_7MPI_0241/A1/1076:1083T-loop related
homologous
HL_8P9A_136
HL_77436.5
HL_7MPI_0251/A1/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_7MPI_0261/A1/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_7MPI_0271/A1/1239:1249No text annotation
HL_7MPI_0281/A1/1266:1275No text annotation
HL_7MPI_0291/A1/1347:1357No text annotation
homologous
HL_8C3A_029
NA
HL_7MPI_0301/A1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7MPI_0311/A1/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7MPI_0321/A1/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_7MPI_0331/A1/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_7MPI_0341/A1/1566:1572No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_7MPI_0351/A1/1599:1608No text annotation
homologous
HL_8C3A_035
NA
HL_7MPI_0361/A1/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_7MPI_0371/A1/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_7MPI_0381/A1/1719:1725No text annotation
homologous
HL_8C3A_038
NA
HL_7MPI_0391/A1/1759:1766No text annotation
homologous
HL_8C3A_039
NA
HL_7MPI_0401/A1/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_7MPI_0411/A1/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_7MPI_0421/A1/1862:1868GNRA
homologous
HL_8C3A_042
NA
HL_7MPI_0431/A1/1923:1928No text annotation
geometric
HL_7RQB_042
NA
HL_7MPI_0441/A1/1953:2094No text annotation
HL_7MPI_0451/A1/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_7MPI_0461/A1/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_7MPI_0471/A1/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_7MPI_0481/A1/2219:2226No text annotation
geometric
HL_6CF2_001
HL_87553.1
HL_7MPI_0491/A1/2251:2265No text annotation
HL_7MPI_0501/A1/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_7MPI_0511/A1/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_7MPI_0521/A1/2439:2508No text annotation
geometric
HL_4V88_198
NA
HL_7MPI_0531/A1/2534:2545Mini UNCG
geometric
HL_4LFB_005
HL_48778.2
HL_7MPI_0541/A1/2568:2573Mini UNCG
geometric
HL_5TBW_071
NA
HL_7MPI_0551/A1/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_7MPI_0561/A1/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_7MPI_0571/A1/2672:2682No text annotation
geometric
HL_7RQB_055
NA
HL_7MPI_0581/A1/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_7MPI_1171/A1/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_7MPI_0601/A1/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_7MPI_0611/A1/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_7MPI_0621/A1/2840:2848No text annotation
homologous
HL_8C3A_062
NA
HL_7MPI_0631/A1/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_7MPI_0641/A1/2920:2926No text annotation
geometric
HL_5TBW_063
NA
HL_7MPI_0651/A1/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_7MPI_0661/A1/3025:3030GNRA
geometric
HL_5TBW_065
NA
HL_7MPI_0671/A1/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7MPI_0681/A1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7MPI_0691/A1/3194:3197Mini UNCG
geometric
HL_4V88_192
NA
HL_7MPI_0701/A1/3240:3247No text annotation
geometric
HL_5TBW_069
NA
HL_7MPI_0711/A1/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_7MPI_0721/A1/3350:3353Mini UNCG
homologous
HL_8C3A_072
NA
HL_7MPI_1181/A3/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7MPI_0731/A3/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_7MPI_0741/A3/88:93GNRA
homologous
HL_5TBW_186
NA
HL_7MPI_1191/A4/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_7MPI_0751/A4/69:89No text annotation
homologous
HL_8P9A_187
HL_51921.1
HL_7MPI_0761/A4/108:114No text annotation
geometric
HL_5TBW_075
NA
HL_7MPI_0771/A4/124:129No text annotation
geometric
HL_5TBW_076
NA
HL_7MPI_0781/B5/7:17No text annotation
geometric
HL_4V88_186
NA
HL_7MPI_0791/B5/70:81No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_7MPI_0801/B5/154:160GNRA related
geometric
HL_4V88_188
NA
HL_7MPI_0811/B5/186:199No text annotation
geometric
HL_361D_002
HL_13963.3
HL_7MPI_0821/B5/228:237No text annotation
HL_7MPI_0831/B5/243:250T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_7MPI_0841/B5/276:279No text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_7MPI_0851/B5/330:338GNRA related
geometric
HL_4V88_193
NA
HL_7MPI_0861/B5/368:373No text annotation
geometric
HL_4V88_194
NA
HL_7MPI_0871/B5/393:404No text annotation
geometric
HL_4V88_195
NA
HL_7MPI_1201/B5/414:419UNCG
homologous
HL_8C3A_202
NA
HL_7MPI_0891/B5/450:456No text annotation
geometric
HL_4V88_197
NA
HL_7MPI_0901/B5/490:497No text annotation
HL_7MPI_0911/B5/520:532No text annotation
geometric
HL_4V88_199
NA
HL_7MPI_0921/B5/569:574GNRA variation
geometric
HL_4V88_200
NA
HL_7MPI_0931/B5/717:723Externally structured
geometric
HL_8C3A_022
NA
HL_7MPI_0941/B5/764:772No text annotation
geometric
HL_4V88_203
NA
HL_7MPI_0951/B5/777:783No text annotation
HL_7MPI_0961/B5/827:845No text annotation
HL_7MPI_0971/B5/900:909No text annotation
geometric
HL_4V88_206
NA
HL_7MPI_0981/B5/937:942GNRA
geometric
HL_4V88_207
NA
HL_7MPI_1211/B5/997:1007No text annotation
homologous
HL_8P9A_211
HL_75293.5
HL_7MPI_1221/B5/1055:1064No text annotation
HL_7MPI_1011/B5/1084:1089GNRA
geometric
HL_4V88_210
NA
HL_7MPI_1231/B5/1121:1126GNRA
homologous
HL_8P9A_214
HL_37824.7
HL_7MPI_1031/B5/1188:1197No text annotation
geometric
HL_4V88_212
NA
HL_7MPI_1041/B5/1238:1247Anticodon loop related
geometric
HL_4V88_213
NA
HL_7MPI_1051/B5/1296:1301GNRA
geometric
HL_2Z75_004
HL_37824.7
HL_7MPI_1061/B5/1309:1316No text annotation
geometric
HL_4V88_215
NA
HL_7MPI_1071/B5/1360:1363Externally structured
geometric
HL_8C3A_022
NA
HL_7MPI_1081/B5/1396:1402GNRA
geometric
HL_5J7L_019
HL_37824.7
HL_7MPI_1091/B5/1501:1506GNRA
geometric
HL_4V88_218
NA
HL_7MPI_1101/B5/1550:1561No text annotation
geometric
HL_4V88_219
NA
HL_7MPI_1111/B5/1594:1602No text annotation
geometric
HL_4V88_220
NA
HL_7MPI_1131/B5/1778:1783GNRA variation
geometric
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_7MPI_012No text annotation
HL_7MPI_014No text annotation
HL_7MPI_020No text annotation
HL_7MPI_116No text annotation
HL_7MPI_059No text annotation
HL_7MPI_088No text annotation
HL_7MPI_099No text annotation
HL_7MPI_100No text annotation
HL_7MPI_102GNRA with extra cWW
HL_7MPI_112No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7MPI_0011/A1/7:8,
1/A4/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_7MPI_0021/A1/13:15,
1/A4/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_7MPI_0031/A1/27:28,
1/A1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_7MPI_0041/A1/31:38,
1/A1/45:53		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_7MPI_0051/A1/82:89,
1/A1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_7MPI_0061/A1/123:124,
1/A1/144:149		No text annotation
homologous
IL_8C3A_007
NA
IL_7MPI_0071/A1/125:127,
1/A1/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7MPI_0081/A1/163:166,
1/A1/256:258		No text annotation
IL_7MPI_0091/A1/168:170,
1/A1/247:254		No text annotation
IL_7MPI_0101/A1/171:175,
1/A1/243:246		No text annotation
IL_7MPI_0111/A1/176:179,
1/A1/237:242		No text annotation
IL_7MPI_0121/A1/189:191,
1/A1/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_7MPI_0131/A1/337:339,
1/A4/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7MPI_0141/A1/376:379,
1/A1/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_7MPI_0151/A1/404:410,
1/A4/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_7MPI_0161/A1/417:419,
1/A4/4:6		No text annotation
geometric
IL_3LA5_001
NA
IL_7MPI_0171/A1/429:431,
1/A1/628:630		Isolated non-canonical cWW pair
geometric
IL_5TBW_016
NA
IL_7MPI_0181/A1/435:495,
1/A1/618:624		No text annotation
IL_7MPI_0191/A1/512:513,
1/A1/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_7MPI_0201/A1/517:525,
1/A1/567:573		No text annotation
geometric
IL_5TBW_019
NA
IL_7MPI_0211/A1/531:538,
1/A1/553:561		No text annotation
geometric
IL_5TBW_020
NA
IL_7MPI_0221/A1/668:670,
1/A1/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_7MPI_0231/A1/680:684,
1/A1/696:700		No text annotation
homologous
IL_8C3A_024
NA
IL_7MPI_0241/A1/725:728,
1/A1/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_7MPI_0251/A1/752:753,
1/A1/779:781		Single bulged A
homologous
IL_8C3A_026
NA
IL_7MPI_0261/A1/755:756,
1/A1/775:777		Single bulged U
geometric
IL_7PMQ_002
IL_89505.4
IL_7MPI_0271/A1/758:763,
1/A1/768:773		No text annotation
geometric
IL_5TBW_026
NA
IL_7MPI_2371/A1/803:805,
1/A1/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7MPI_2381/A1/805:809,
1/A1/931:938		No text annotation
homologous
IL_8P9A_256
IL_54041.2
IL_7MPI_0301/A1/828:829,
1/A1/895:897		Single bulged A
geometric
IL_4V9F_025
IL_31462.6
IL_7MPI_0311/A1/833:834,
1/A1/859:861		Single bulged G
geometric
IL_5TBW_029
NA
IL_7MPI_0321/A1/834:838,
1/A1/855:859		Triple sheared
homologous
IL_8C3A_033
NA
IL_7MPI_0331/A1/869:872,
1/A1/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7MPI_0341/A1/873:875,
1/A1/886:887		Single bulged U
geometric
IL_5TBW_032
NA
IL_7MPI_0351/A1/907:909,
1/A1/919:923		No text annotation
homologous
IL_8C3A_036
NA
IL_7MPI_0361/A1/969:970,
1/A1/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_7MPI_0371/A1/977:982,
1/A1/1101:1104		Kink-turn related
homologous
IL_8C3A_039
NA
IL_7MPI_0381/A1/983:985,
1/A1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7MPI_0391/A1/991:997,
1/A1/1052:1058		No text annotation
homologous
IL_8C3A_041
NA
IL_7MPI_0401/A1/997:998,
1/A1/1050:1052		Minor groove platform
homologous
IL_8C3A_042
NA
IL_7MPI_0411/A1/999:1004,
1/A1/1046:1049		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_7MPI_0421/A1/1006:1009,
1/A1/1041:1044		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7MPI_0431/A1/1009:1011,
1/A1/1039:1041		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_7MPI_0441/A1/1069:1071,
1/A1/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_7MPI_0451/A1/1074:1076,
1/A1/1083:1084		Single bulged A
geometric
IL_5TBW_045
NA
IL_7MPI_0461/A1/1120:1122,
1/A1/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7MPI_0481/A1/1167:1171,
1/A1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7MPI_0491/A1/1173:1180,
1/A1/1325:1326		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_7MPI_0501/A1/1180:1182,
1/A1/1324:1325		Single bulged U
geometric
IL_5TBW_050
NA
IL_7MPI_0511/A1/1187:1194,
1/A1/1314:1319		No text annotation
geometric
IL_5TBW_051
NA
IL_7MPI_0521/A1/1194:1205,
1/A1/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_7MPI_0531/A1/1207:1209,
1/A1/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_7MPI_0541/A1/1218:1226,
1/A1/1283:1287		Kink-turn
homologous
IL_8C3A_057
NA
IL_7MPI_0551/A1/1262:1266,
1/A1/1275:1277		No text annotation
IL_7MPI_0561/A1/1376:1378,
1/A1/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_7MPI_0571/A1/1385:1387,
1/A1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_7MPI_0581/A1/1388:1395,
1/A1/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_7MPI_0591/A1/1398:1400,
1/A1/1411:1412		Single bulged A
geometric
IL_5TBW_060
NA
IL_7MPI_2391/A1/1444:1450,
1/A1/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_7MPI_0611/A1/1501:1505,
1/A1/1513:1515		C-loop
geometric
IL_7RQB_051
NA
IL_7MPI_0621/A1/1532:1536,
1/A1/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7MPI_0631/A1/1562:1566,
1/A1/1572:1577		No text annotation
IL_7MPI_0641/A1/1618:1621,
1/A1/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_7MPI_0651/A1/1623:1624,
1/A1/1820:1822		Single bulged U
geometric
IL_2R8S_004
IL_89505.4
IL_7MPI_0661/A1/1625:1631,
1/A1/1811:1819		No text annotation
IL_7MPI_0671/A1/1645:1649,
1/A1/1806:1810		Triple sheared
geometric
IL_5TBW_067
NA
IL_7MPI_0681/A1/1661:1663,
1/A1/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_7MPI_0691/A1/1669:1670,
1/A1/1778:1780		Single bulged C
homologous
IL_8C3A_075
NA
IL_7MPI_0701/A1/1670:1671,
1/A1/1776:1778		Single stack bend
homologous
IL_8C3A_076
NA
IL_7MPI_0711/A1/1702:1707,
1/A1/1737:1743		No text annotation
homologous
IL_8C3A_078
NA
IL_7MPI_0721/A1/1711:1717,
1/A1/1727:1733		No text annotation
homologous
IL_8C3A_079
NA
IL_7MPI_0731/A1/1883:1889,
1/A1/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_7MPI_0741/A1/1895:1897,
1/A1/2338:2340		Isolated tWW turn
geometric
IL_4WF9_063
IL_67095.2
IL_7MPI_2401/A1/1898:1901,
1/A1/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_7MPI_2411/A1/1898:1906,
1/A1/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_7MPI_0761/A1/1901:1906,
1/A1/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_7MPI_0771/A1/1918:1923,
1/A1/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_7MPI_0781/A1/1940:1942,
1/A1/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7MPI_0791/A1/1947:1948,
1/A1/2098:2101		No text annotation
homologous
IL_8C3A_086
NA
IL_7MPI_2421/A1/1949:1953,
1/A1/2094:2097		No text annotation
IL_7MPI_0801/A1/1951:1953,
1/A1/2094:2095		No text annotation
IL_7MPI_0811/A1/2128:2129,
1/A1/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_7MPI_0821/A1/2156:2161,
1/A1/2173:2180		No text annotation
homologous
IL_8C3A_088
NA
IL_7MPI_0831/A1/2196:2199,
1/A1/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_7MPI_0841/A1/2200:2201,
1/A1/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_7MPI_0851/A1/2204:2206,
1/A1/2237:2238		Single bulged U
geometric
IL_3TZR_002
IL_89505.4
IL_7MPI_0861/A1/2206:2210,
1/A1/2235:2237		Major groove platform with extra pair
geometric
IL_5TBW_087
NA
IL_7MPI_0871/A1/2211:2217,
1/A1/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_7MPI_0881/A1/2276:2277,
1/A1/2307:2310		No text annotation
homologous
IL_8C3A_094
NA
IL_7MPI_2431/A1/2277:2288,
1/A1/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_7MPI_0901/A1/2391:2394,
1/A1/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_7MPI_0911/A1/2396:2398,
1/A1/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_7MPI_0921/A1/2409:2411,
1/A1/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_7MPI_0931/A1/2412:2413,
1/A1/2807:2810		Minor groove platform
homologous
IL_8C3A_099
NA
IL_7MPI_0951/A1/2423:2425,
1/A1/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_7MPI_0961/A1/2520:2526,
1/A1/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_7MPI_0971/A1/2614:2615,
1/A1/2625:2627		Single bulged A
homologous
IL_8C3A_107
NA
IL_7MPI_0981/A1/2666:2668,
1/A1/2686:2690		No text annotation
homologous
IL_8C3A_108
NA
IL_7MPI_0991/A1/2718:2721,
1/A1/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_7MPI_1011/A1/2770:2773,
1/A1/2787:2788		Single stack bend with bulge
homologous
IL_8C3A_110
NA
IL_7MPI_1021/A1/2823:2826,
1/A1/2863:2867		No text annotation
geometric
IL_8C3A_111
NA
IL_7MPI_2441/A1/2823:2828,
1/A1/2862:2867		No text annotation
IL_7MPI_1031/A1/2826:2828,
1/A1/2862:2863		Major groove platform
homologous
IL_8C3A_112
NA
IL_7MPI_1041/A1/2828:2830,
1/A1/2858:2862		Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
IL_51387.2
IL_7MPI_1051/A1/2835:2839,
1/A1/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_7MPI_1061/A1/2876:2877,
1/A1/2949:2951		Major groove platform
geometric
IL_4WF9_094
IL_07039.3
IL_7MPI_1081/A1/2879:2881,
1/A1/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_7MPI_1091/A1/2881:2882,
1/A1/2940:2943		Multiple bulged bases
geometric
IL_4V9F_088
IL_42626.2
IL_7MPI_1101/A1/2889:2891,
1/A1/2912:2914		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_7MPI_2451/A1/2889:2892,
1/A1/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_7MPI_1111/A1/2891:2892,
1/A1/2909:2912		Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_7MPI_1121/A1/2918:2920,
1/A1/2926:2928		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_7MPI_1141/A1/2960:2961,
1/A1/2970:2972		Single bulged A
geometric
IL_1I9X_002
IL_31462.6
IL_7MPI_1151/A1/3004:3007,
1/A1/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_7MPI_1161/A1/3012:3014,
1/A1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7MPI_1171/A1/3016:3018,
1/A1/3036:3038		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_7MPI_1181/A1/3018:3025,
1/A1/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7MPI_1191/A1/3047:3051,
1/A1/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_7MPI_1201/A1/3054:3059,
1/A1/3084:3088		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_7MPI_1211/A1/3063:3064,
1/A1/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_7MPI_1221/A1/3103:3107,
1/A1/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_7MPI_1231/A1/3164:3166,
1/A1/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_7MPI_1241/A1/3168:3170,
1/A1/3280:3282		Isolated non-canonical cWW pair
geometric
IL_4KNQ_005
NA
IL_7MPI_1251/A1/3177:3179,
1/A1/3210:3211		Single bulged A
geometric
IL_5TBW_123
NA
IL_7MPI_1261/A1/3179:3188,
1/A1/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_7MPI_1271/A1/3193:3194,
1/A1/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_7MPI_1281/A1/3225:3229,
1/A1/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_7MPI_1291/A1/3233:3235,
1/A1/3252:3254		No text annotation
geometric
IL_2ZNI_001
NA
IL_7MPI_1301/A1/3235:3238,
1/A1/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_77658.1
IL_7MPI_1311/A1/3300:3303,
1/A1/3311:3314		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_7MPI_1321/A1/3318:3320,
1/A1/3387:3388		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_7MPI_1331/A1/3324:3325,
1/A1/3381:3383		Single bulged U
homologous
IL_8C3A_137
NA
IL_7MPI_1341/A1/3328:3330,
1/A1/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_7MPI_1351/A1/3332:3337,
1/A1/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_7MPI_1361/A1/3340:3342,
1/A1/3363:3364		Single bulged U
homologous
IL_8C3A_140
NA
IL_7MPI_1371/A1/3342:3345,
1/A1/3360:3363		Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_7MPI_1381/A1/3349:3350,
1/A1/3353:3356		Multiple bulged bases
geometric
IL_5TBW_136
NA
IL_7MPI_1391/A3/15:16,
1/A3/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_7MPI_1401/A3/21:27,
1/A3/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7MPI_1411/A3/28:29,
1/A3/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_7MPI_1421/A3/29:30,
1/A3/47:49		Single stack bend
homologous
IL_5TBW_375
NA
IL_7MPI_1431/A3/32:36,
1/A3/41:45		Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_7MPI_1441/A3/72:80,
1/A3/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_7MPI_1451/A3/84:87,
1/A3/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7MPI_1461/A4/44:64,
1/A4/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_7MPI_1471/A4/64:66,
1/A4/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_7MPI_1481/A4/68:69,
1/A4/89:91		Single bulged U
geometric
IL_5TBW_146
NA
IL_7MPI_1491/B5/24:26,
1/B5/600:601		Single bulged C
geometric
IL_7KGA_004
IL_61258.15
IL_7MPI_1511/B5/35:37,
1/B5/471:473		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_7MPI_1521/B5/37:41,
1/B5/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_7MPI_1531/B5/42:48,
1/B5/431:433		No text annotation
geometric
IL_4V88_387
NA
IL_7MPI_1541/B5/50:52,
1/B5/428:429		Minor groove platform
geometric
IL_4LFB_004
IL_51454.3
IL_7MPI_1551/B5/58:63,
1/B5/87:89		No text annotation
geometric
IL_4V88_389
NA
IL_7MPI_1561/B5/64:69,
1/B5/82:86		No text annotation
geometric
IL_4V88_390
NA
IL_7MPI_1571/B5/109:112,
1/B5/302:305		Tandem non-canonical cWW pairs
geometric
IL_4V88_391
NA
IL_7MPI_1581/B5/113:116,
1/B5/300:301		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7MPI_1591/B5/117:122,
1/B5/295:299		No text annotation
geometric
IL_4V88_393
NA
IL_7MPI_1601/B5/143:149,
1/B5/165:172		tWH-tWH-tHW-tHW
geometric
IL_4V88_394
NA
IL_7MPI_1611/B5/150:152,
1/B5/162:164		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.6
IL_7MPI_1621/B5/204:206,
1/B5/259:263		Major groove platform with extra cWW
geometric
IL_4V88_397
NA
IL_7MPI_1631/B5/206:208,
1/B5/257:259		Isolated non-canonical cWW pair
geometric
IL_4V88_398
NA
IL_7MPI_1641/B5/265:267,
1/B5/288:289		Single bulged A
geometric
IL_4V88_399
NA
IL_7MPI_1651/B5/270:273,
1/B5/283:285		No text annotation
geometric
IL_4V88_400
NA
IL_7MPI_1661/B5/275:276,
1/B5/279:281		Single bulged U
geometric
IL_4V88_401
NA
IL_7MPI_1671/B5/311:316,
1/B5/348:355		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_7MPI_1681/B5/318:323,
1/B5/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_7MPI_1691/B5/363:365,
1/B5/376:381		No text annotation
geometric
IL_4V88_404
NA
IL_7MPI_1701/B5/389:391,
1/B5/406:408		Isolated cWH basepair
geometric
IL_4V88_405
NA
IL_7MPI_2471/B5/411:413,
1/B5/420:422		Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_7MPI_1711/B5/439:441,
1/B5/463:464		Single bulged U
geometric
IL_4V88_407
NA
IL_7MPI_1721/B5/443:447,
1/B5/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7MPI_1731/B5/447:448,
1/B5/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_7MPI_1741/B5/480:484,
1/B5/503:508		No text annotation
IL_7MPI_2481/B5/517:518,
1/B5/533:535		Minor groove platform
homologous
IL_8C3A_501
NA
IL_7MPI_1761/B5/518:520,
1/B5/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_7MPI_1771/B5/550:557,
1/B5/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_7MPI_1781/B5/557:559,
1/B5/586:587		Single bulged U
geometric
IL_5TBW_146
NA
IL_7MPI_2491/B5/562:568,
1/B5/575:583		No text annotation
homologous
IL_8P9A_404
IL_54177.4
IL_7MPI_1801/B5/616:622,
1/B5/1104:1105		No text annotation
geometric
IL_4LFB_022
IL_38186.6
IL_7MPI_1811/B5/624:626,
1/B5/973:975		Isolated non-canonical cWW pair
geometric
IL_4V88_417
NA
IL_7MPI_1821/B5/627:631,
1/B5/968:972		tSH-tHW-tHS
geometric
IL_4V88_418
NA
IL_7MPI_1831/B5/646:648,
1/B5/686:688		Isolated non-canonical cWW pair
geometric
IL_5UNE_004
IL_57744.1
IL_7MPI_1841/B5/651:658,
1/B5/676:683		No text annotation
IL_7MPI_2501/B5/703:717,
1/B5/723:735		No text annotation
IL_7MPI_2581/B5/746:747,
1/B5/802:805		No text annotation
homologous
IL_8CRE_428
IL_68140.4
IL_7MPI_1861/B5/748:750,
1/B5/799:801		Isolated non-canonical cWW pair
geometric
IL_4V88_424
NA
IL_7MPI_1871/B5/751:759,
1/B5/791:798		No text annotation
geometric
IL_4V88_425
NA
IL_7MPI_1881/B5/817:824,
1/B5/848:854		No text annotation
IL_7MPI_1891/B5/865:866,
1/B5/962:965		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_7MPI_2521/B5/868:869,
1/B5/958:960		Single bulged U
geometric
IL_2OIU_003
IL_89505.4
IL_7MPI_2531/B5/871:873,
1/B5/954:956		Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_87907.2
IL_7MPI_1921/B5/874:878,
1/B5/950:953		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7MPI_1931/B5/885:888,
1/B5/924:927		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_7MPI_1941/B5/893:899,
1/B5/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_7MPI_1951/B5/985:990,
1/B5/1014:1016		Other IL
geometric
IL_4V88_435
NA
IL_7MPI_1961/B5/990:994,
1/B5/1010:1014		tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_7MPI_1971/B5/1034:1036,
1/B5/1095:1101		No text annotation
geometric
IL_4V88_437
NA
IL_7MPI_1981/B5/1041:1044,
1/B5/1074:1077		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7MPI_1991/B5/1051:1053,
1/B5/1066:1067		Single bulged U
geometric
IL_5TBW_093
NA
IL_7MPI_2001/B5/1111:1118,
1/B5/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_41756.4
IL_7MPI_2011/B5/1146:1147,
1/B5/1630:1632		Single bulged A
geometric
IL_5J7L_039
IL_31462.6
IL_7MPI_2021/B5/1149:1151,
1/B5/1627:1628		Single bulged G
geometric
IL_4LFB_036
IL_00225.13
IL_7MPI_2031/B5/1157:1160,
1/B5/1617:1621		C-loop
geometric
IL_4V88_443
NA
IL_7MPI_2041/B5/1173:1175,
1/B5/1464:1466		Isolated non-canonical cWW pair
geometric
IL_4V88_444
NA
IL_7MPI_2051/B5/1178:1179,
1/B5/1459:1461		Minor groove platform
geometric
IL_4V88_445
NA
IL_7MPI_2061/B5/1213:1215,
1/B5/1448:1450		Isolated non-canonical cWW pair
geometric
IL_1KFO_002
IL_87907.2
IL_7MPI_2071/B5/1224:1233,
1/B5/1252:1259		No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_7MPI_2081/B5/1234:1236,
1/B5/1249:1251		No text annotation
geometric
IL_4V88_448
NA
IL_7MPI_2541/B5/1268:1270,
1/B5/1440:1441		Single bulged U
homologous
IL_8C3A_455
NA
IL_7MPI_2101/B5/1272:1276,
1/B5/1436:1438		Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_7MPI_2551/B5/1272:1278,
1/B5/1430:1438		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_7MPI_2111/B5/1276:1278,
1/B5/1430:1436		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_7MPI_2561/B5/1280:1281,
1/B5/1426:1428		Single bulged A
homologous
IL_8C3A_458
NA
IL_7MPI_2131/B5/1290:1292,
1/B5/1323:1325		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_7MPI_2141/B5/1306:1308,
1/B5/1317:1318		Minor groove platform
geometric
IL_4LFB_054
IL_51454.3
IL_7MPI_2151/B5/1339:1342,
1/B5/1383:1385		Isolated non-canonical cWW pair
geometric
IL_4V88_455
NA
IL_7MPI_2161/B5/1344:1348,
1/B5/1377:1381		No text annotation
IL_7MPI_2591/B5/1352:1354,
1/B5/1369:1373		No text annotation
IL_7MPI_2181/B5/1389:1391,
1/B5/1407:1412		Major groove platform; stack outside cWW
geometric
IL_4V88_458
NA
IL_7MPI_2191/B5/1480:1487,
1/B5/1519:1527		No text annotation
geometric
IL_4V88_459
NA
IL_7MPI_2201/B5/1488:1494,
1/B5/1513:1518		No text annotation
geometric
IL_8P9A_449
IL_22564.1
IL_7MPI_2211/B5/1495:1498,
1/B5/1509:1512		Tandem non-canonical cWW pairs
geometric
IL_4V88_461
NA
IL_7MPI_2221/B5/1540:1545,
1/B5/1566:1571		No text annotation
geometric
IL_4V88_462
NA
IL_7MPI_2231/B5/1636:1638,
1/B5/1764:1767		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_7MPI_2241/B5/1638:1641,
1/B5/1760:1764		No text annotation
geometric
IL_4V88_464
NA
IL_7MPI_2251/B5/1642:1644,
1/B5/1757:1759		Isolated non-canonical cWW pair
geometric
IL_3GM7_004
IL_87907.2
IL_7MPI_2261/B5/1644:1647,
1/B5/1753:1757		Non canonical cWW and near pair
geometric
IL_4V88_466
NA
IL_7MPI_2271/B5/1650:1652,
1/B5/1748:1750		Isolated non-canonical cWW pair
geometric
IL_4V88_467
NA
IL_7MPI_2281/B5/1653:1656,
1/B5/1744:1747		Double sheared
geometric
IL_4V88_468
NA
IL_7MPI_2291/B5/1656:1658,
1/B5/1743:1744		Single bulged U
geometric
IL_6CZR_156
NA
IL_7MPI_2301/B5/1665:1667,
1/B5/1734:1736		Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_07785.1
IL_7MPI_2311/B5/1669:1672,
1/B5/1729:1732		Double sheared
geometric
IL_4V88_471
NA
IL_7MPI_2321/B5/1672:1674,
1/B5/1727:1729		Isolated non-canonical cWW pair
geometric
IL_4V88_472
NA
IL_7MPI_2331/B5/1675:1678,
1/B5/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_7MPI_2341/B5/1678:1682,
1/B5/1719:1723		Triple sheared
geometric
IL_4V88_474
NA
IL_7MPI_2351/B5/1686:1690,
1/B5/1711:1715		No text annotation

Problematic loops

#loop idProblemSequence
IL_7MPI_028No text annotation
IL_7MPI_029Isolated non-canonical cWW pair
IL_7MPI_047No text annotation
IL_7MPI_0608x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
IL_7MPI_075Major groove platform with extra pair
IL_7MPI_089No text annotation
IL_7MPI_094No text annotation
IL_7MPI_100Isolated non-canonical cWW pair
IL_7MPI_107Isolated non-canonical cWW pair
IL_7MPI_113No text annotation
IL_7MPI_246No text annotation
IL_7MPI_150Isolated non-canonical cWW pair
IL_7MPI_175Minor groove platform with extra cWW
IL_7MPI_179No text annotation
IL_7MPI_185No text annotation
IL_7MPI_251No text annotation
IL_7MPI_190Isolated non-canonical cWW pair
IL_7MPI_191Tandem non-canonical cWW pairs
IL_7MPI_209Isolated non-canonical cWW pair
IL_7MPI_212Isolated non-canonical cWW pair
IL_7MPI_217No text annotation
IL_7MPI_257Isolated cWH basepair
IL_7MPI_236Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7MPI_0011/A1/113:123,
1/A1/149:158,
1/A1/263:267		No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_7MPI_0301/A1/113:124,
1/A1/144:158,
1/A1/263:267		No text annotation
J3_7MPI_0311/A1/185:189,
1/A1/205:214,
1/A1/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_7MPI_0321/A1/340:356,
1/A1/363:368,
1/A4/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_7MPI_0021/A1/369:376,
1/A1/403:404,
1/A4/19:20		No text annotation
geometric
J3_8C3A_048
NA
J3_7MPI_0331/A1/369:379,
1/A1/390:404,
1/A4/19:20		No text annotation
homologous
J3_8P9A_047
J3_92134.2
J3_7MPI_0031/A1/502:503,
1/A1/588:597,
1/A1/606:611		No text annotation
homologous
J3_8P9A_048
J3_83726.1
J3_7MPI_0041/A1/814:820,
1/A1/905:907,
1/A1/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_7MPI_0341/A1/829:831,
1/A1/863:867,
1/A1/892:895		No text annotation
homologous
J3_8C3A_004
NA
J3_7MPI_0061/A1/986:987,
1/A1/1062:1066,
1/A1/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_7MPI_0461/A1/1230:1239,
1/A1/1249:1262,
1/A1/1277:1279		No text annotation
J3_7MPI_0071/A1/1479:1485,
1/A1/1857:1859,
1/A1/1871:1874		No text annotation
homologous
J3_8C3A_006
NA
J3_7MPI_0081/A1/1488:1491,
1/A1/1837:1843,
1/A1/1852:1854		No text annotation
homologous
J3_8C3A_007
NA
J3_7MPI_0091/A1/1526:1531,
1/A1/1591:1595,
1/A1/1612:1613		No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_7MPI_0361/A1/1537:1542,
1/A1/1551:1561,
1/A1/1578:1584		No text annotation
homologous
J3_8C3A_053
NA
J3_7MPI_0101/A1/1631:1632,
1/A1/1641:1645,
1/A1/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_7MPI_0371/A1/1654:1658,
1/A1/1791:1792,
1/A1/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_7MPI_0111/A1/2432:2435,
1/A1/2512:2517,
1/A1/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_7MPI_0381/A1/2529:2533,
1/A1/2546:2563,
1/A1/2578:2581		No text annotation
J3_7MPI_0391/A1/2651:2653,
1/A1/2754:2765,
1/A1/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_7MPI_0131/A1/2664:2666,
1/A1/2690:2692,
1/A1/2701:2706		No text annotation
homologous
J3_8C3A_010
NA
J3_7MPI_0141/A1/2886:2889,
1/A1/2914:2916,
1/A1/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_7MPI_0401/A1/3171:3176,
1/A1/3212:3220,
1/A1/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_7MPI_0151/A1/3298:3300,
1/A1/3314:3318,
1/A1/3388:3390		No text annotation
homologous
J3_8P9A_065
J3_81015.1
J3_7MPI_0161/A3/9:14,
1/A3/66:67,
1/A3/111:112		No text annotation
homologous
J3_5TBW_045
NA
J3_7MPI_0411/A4/44:45,
1/A4/58:64,
1/A4/96:100		No text annotation
homologous
J3_8P9A_067
J3_35667.2
J3_7MPI_0171/B5/41:42,
1/B5/433:439,
1/B5/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_7MPI_0421/B5/41:48,
1/B5/431:439,
1/B5/464:466		No text annotation
homologous
J3_8C3A_083
NA
J3_7MPI_0431/B5/213:228,
1/B5/237:243,
1/B5/250:252		No text annotation
J3_7MPI_0181/B5/633:635,
1/B5/861:865,
1/B5/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_7MPI_0441/B5/633:635,
1/B5/861:866,
1/B5/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_7MPI_0191/B5/760:763,
1/B5/773:775,
1/B5/785:790		No text annotation
homologous
J3_8C3A_035
NA
J3_7MPI_0201/B5/881:884,
1/B5/928:936,
1/B5/943:947		No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_7MPI_0211/B5/1037:1039,
1/B5/1079:1083,
1/B5/1090:1094		No text annotation
homologous
J3_8C3A_037
NA
J3_7MPI_0221/B5/1161:1164,
1/B5/1581:1587,
1/B5/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_7MPI_0231/B5/1168:1171,
1/B5/1468:1470,
1/B5/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J3_7MPI_0241/B5/1180:1187,
1/B5/1198:1209,
1/B5/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_7MPI_0251/B5/1215:1220,
1/B5/1263:1267,
1/B5/1442:1448		No text annotation
homologous
J3_8C3A_041
NA
J3_7MPI_0261/B5/1283:1288,
1/B5/1327:1332,
1/B5/1419:1424		No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_7MPI_0271/B5/1293:1294,
1/B5/1303:1306,
1/B5/1318:1322		No text annotation
homologous
J3_8P9A_081
J3_76043.3
J3_7MPI_0281/B5/1336:1338,
1/B5/1386:1389,
1/B5/1412:1415		No text annotation
homologous
J3_8C3A_043
NA
J3_7MPI_0451/B5/1336:1338,
1/B5/1386:1391,
1/B5/1407:1415		No text annotation
homologous
J3_8C3A_086
NA
J3_7MPI_0291/B5/1470:1474,
1/B5/1533:1540,
1/B5/1571:1574		No text annotation
homologous
J3_8C3A_044
NA
J4_7MPI_0011/A1/112:113,
1/A1/267:272,
1/A1/293:300,
1/A1/315:319		No text annotation
J4_7MPI_0021/A1/185:189,
1/A1/205:208,
1/A1/212:214,
1/A1/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_7MPI_0031/A1/1451:1457,
1/A1/1475:1476,
1/A1/1877:1880,
1/A1/2352:2353		No text annotation
homologous
J4_8C3A_003
NA
J4_7MPI_0041/A1/1492:1496,
1/A1/1520:1525,
1/A1/1614:1615,
1/A1/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_7MPI_0051/A1/1674:1675,
1/A1/1693:1698,
1/A1/1747:1753,
1/A1/1772:1773		No text annotation
J4_7MPI_0061/A1/2130:2134,
1/A1/2146:2150,
1/A1/2186:2190,
1/A1/2317:2322		No text annotation
homologous
J4_8C3A_006
NA
J4_7MPI_0071/A1/2192:2194,
1/A1/2248:2249,
1/A1/2267:2276,
1/A1/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J4_7MPI_0081/A1/2654:2658,
1/A1/2712:2716,
1/A1/2740:2742,
1/A1/2751:2753		No text annotation
homologous
J4_8C3A_008
NA
J4_7MPI_0091/A1/3010:3012,
1/A1/3042:3043,
1/A1/3098:3100,
1/A1/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_7MPI_0101/B5/99:107,
1/B5/307:309,
1/B5/357:361,
1/B5/383:384		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_7MPI_0111/B5/622:624,
1/B5/975:980,
1/B5/1021:1032,
1/B5/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J5_7MPI_0011/A1/20:22,
1/A4/35:42,
1/A4/102:107,
1/A4/115:116,
1/A4/137:139		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_7MPI_0021/A1/658:663,
1/A1/799:802,
1/A1/941:944,
1/A1/1375:1376,
1/A1/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_7MPI_0031/A1/675:678,
1/A1/702:706,
1/A1/713:721,
1/A1/749:751,
1/A1/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_7MPI_0041/A1/1906:1914,
1/A1/1938:1939,
1/A1/2109:2110,
1/A1/2114:2122,
1/A1/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_7MPI_0051/A1/2399:2406,
1/A1/2815:2823,
1/A1/2867:2876,
1/A1/2951:2957,
1/A1/2975:2980		No text annotation
J5_7MPI_0061/A1/2416:2419,
1/A1/2611:2614,
1/A1/2627:2628,
1/A1/2650:2651,
1/A1/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J5_7MPI_0071/B5/31:35,
1/B5/473:479,
1/B5/509:516,
1/B5/536:546,
1/B5/592:595		No text annotation
J5_7MPI_0081/B5/54:57,
1/B5/90:97,
1/B5/386:388,
1/B5/409:411,
1/B5/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_7MPI_0091/B5/124:143,
1/B5/172:182,
1/B5/203:204,
1/B5/263:265,
1/B5/289:293		No text annotation
J5_7MPI_0101/B5/124:143,
1/B5/172:182,
1/B5/203:204,
1/B5/263:267,
1/B5/288:293		No text annotation
J5_7MPI_0111/B5/636:641,
1/B5/693:701,
1/B5/737:744,
1/B5/807:817,
1/B5/854:860		No text annotation
J6_7MPI_0011/A1/22:27,
1/A1/58:68,
1/A1/75:79,
1/A1/106:110,
1/A1/321:331,
1/A4/32:35		No text annotation
J6_7MPI_0021/A1/2416:2419,
1/A1/2611:2614,
1/A1/2627:2628,
1/A1/2650:2653,
1/A1/2754:2765,
1/A1/2793:2804		No text annotation
J7_7MPI_0011/A1/949:956,
1/A1/965:968,
1/A1/1114:1117,
1/A1/1141:1146,
1/A1/1157:1161,
1/A1/1338:1339,
1/A1/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_7MPI_005No text annotation
J3_7MPI_035No text annotation
J3_7MPI_012No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.1511 s