HL_7MPI_024

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_024 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.3816

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7MPI|1|A1|C|1076
7MPI|1|A1|U|1077
7MPI|1|A1|U|1078
7MPI|1|A1|A|1079
7MPI|1|A1|A|1080
7MPI|1|A1|U|1081
7MPI|1|A1|U|1082
7MPI|1|A1|G|1083

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AT

60S ribosomal protein L21-A

Chain Ab

60S ribosomal protein L29