HL_7MPI_037

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

7MPI|1|A1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1088

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7MPI|1|A1|G|1680
7MPI|1|A1|U|1681
7MPI|1|A1|U|1682
7MPI|1|A1|A|1683
7MPI|1|A1|U|1684
7MPI|1|A1|C|1685
7MPI|1|A1|U|1686
7MPI|1|A1|U|1687
7MPI|1|A1|U|1688

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A