HL_7MPI_051

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7MPI|1|A1|A|2372, 7MPI|1|A1|A|2373, 7MPI|1|A1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0649

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7MPI|1|A1|G|2369
7MPI|1|A1|G|2370
7MPI|1|A1|G|2371
7MPI|1|A1|A|2372
7MPI|1|A1|A|2373
7MPI|1|A1|C|2374
7MPI|1|A1|G|2375
7MPI|1|A1|G|2376
7MPI|1|A1|G|2377
7MPI|1|A1|C|2378

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Ae

60S ribosomal protein L32