HL_7MPI_053

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

7MPI|1|A1|A|2535, 7MPI|1|A1|U|2537, 7MPI|1|A1|C|2539, 7MPI|1|A1|A|2540, 7MPI|1|A1|U|2541, 7MPI|1|A1|U|2543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_053 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2442

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7MPI|1|A1|G|2534
7MPI|1|A1|A|2535
7MPI|1|A1|A|2536
7MPI|1|A1|U|2537
7MPI|1|A1|U|2538
7MPI|1|A1|C|2539
7MPI|1|A1|A|2540
7MPI|1|A1|U|2541
7MPI|1|A1|U|2542
7MPI|1|A1|U|2543
7MPI|1|A1|U|2544
7MPI|1|A1|C|2545

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain BB

40S ribosomal protein S1-A