HL_7MPI_055

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7MPI|1|A1|G|2618

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1593

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7MPI|1|A1|C|2616
7MPI|1|A1|U|2617
7MPI|1|A1|G|2618
7MPI|1|A1|OMG|2619
7MPI|1|A1|G|2620
7MPI|1|A1|G|2621
7MPI|1|A1|C|2622
7MPI|1|A1|G|2623
7MPI|1|A1|G|2624

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Ab

60S ribosomal protein L29