HL_7MPI_064

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

U(OMU)(OMG)UUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_064 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1559

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7MPI|1|A1|U|2920
7MPI|1|A1|OMU|2921
7MPI|1|A1|OMG|2922
7MPI|1|A1|U|2923
7MPI|1|A1|U|2924
7MPI|1|A1|C|2925
7MPI|1|A1|A|2926

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3