HL_7MPI_068

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7MPI|1|A1|G|3116, 7MPI|1|A1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0619

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7MPI|1|A1|C|3110
7MPI|1|A1|U|3111
7MPI|1|A1|G|3112
7MPI|1|A1|A|3113
7MPI|1|A1|A|3114
7MPI|1|A1|C|3115
7MPI|1|A1|G|3116
7MPI|1|A1|C|3117
7MPI|1|A1|C|3118
7MPI|1|A1|U|3119
7MPI|1|A1|C|3120
7MPI|1|A1|U|3121
7MPI|1|A1|A|3122
7MPI|1|A1|A|3123
7MPI|1|A1|G|3124

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L16-A

Chain Am

60S ribosomal protein L40-A