HL_7MPI_081

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

7MPI|1|B5|C|191, 7MPI|1|B5|U|192, 7MPI|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_081 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.271

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7MPI|1|B5|C|186
7MPI|1|B5|G|187
7MPI|1|B5|A|188
7MPI|1|B5|C|189
7MPI|1|B5|C|190
7MPI|1|B5|C|191
7MPI|1|B5|U|192
7MPI|1|B5|U|193
7MPI|1|B5|U|194
7MPI|1|B5|G|195
7MPI|1|B5|G|196
7MPI|1|B5|A|197
7MPI|1|B5|A|198
7MPI|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A