HL_7MPI_091

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_091 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1089

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7MPI|1|B5|A|520
7MPI|1|B5|A|521
7MPI|1|B5|U|522
7MPI|1|B5|G|523
7MPI|1|B5|U|524
7MPI|1|B5|A|525
7MPI|1|B5|A|526
7MPI|1|B5|A|527
7MPI|1|B5|U|528
7MPI|1|B5|A|529
7MPI|1|B5|C|530
7MPI|1|B5|C|531
7MPI|1|B5|U|532

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BJ

40S ribosomal protein S9-A

Chain BY

40S ribosomal protein S24-A