HL_7MPI_100

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUUUUUUAAUGA

Length

12 nucleotides

Bulged bases

7MPI|1|B5|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_100 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.1594

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7MPI|1|B5|U|1054
7MPI|1|B5|U|1055
7MPI|1|B5|U|1056
7MPI|1|B5|U|1057
7MPI|1|B5|U|1058
7MPI|1|B5|U|1059
7MPI|1|B5|U|1060
7MPI|1|B5|A|1061
7MPI|1|B5|A|1062
7MPI|1|B5|U|1063
7MPI|1|B5|G|1064
7MPI|1|B5|A|1065

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S1-A

Chain BR

40S ribosomal protein S17-A

Chain Bb

40S ribosomal protein S27-A