HL_7MPJ_022

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

7MPJ|1|A1|C|959, 7MPJ|1|A1|C|961, 7MPJ|1|A1|A|962

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2158

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7MPJ|1|A1|C|958
7MPJ|1|A1|C|959
7MPJ|1|A1|PSU|960
7MPJ|1|A1|C|961
7MPJ|1|A1|A|962
7MPJ|1|A1|G|963

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Aa

60S ribosomal protein L28

Chain Ab

60S ribosomal protein L29

Chain Ao

60S ribosomal protein L42-A