HL_7MPJ_023
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUUCCGGGGUCACCUUGAC
- Length
- 19 nucleotides
- Bulged bases
- 7MPJ|1|A1|U|1014, 7MPJ|1|A1|U|1015, 7MPJ|1|A1|C|1016, 7MPJ|1|A1|C|1017, 7MPJ|1|A1|G|1018, 7MPJ|1|A1|C|1023, 7MPJ|1|A1|C|1032, 7MPJ|1|A1|U|1034
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_023 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.344
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7MPJ|1|A1|G|1013
7MPJ|1|A1|U|1014
7MPJ|1|A1|U|1015
7MPJ|1|A1|C|1016
7MPJ|1|A1|C|1017
7MPJ|1|A1|G|1018
7MPJ|1|A1|G|1019
7MPJ|1|A1|G|1020
7MPJ|1|A1|G|1021
7MPJ|1|A1|U|1022
7MPJ|1|A1|C|1023
7MPJ|1|A1|A|1030
7MPJ|1|A1|C|1031
7MPJ|1|A1|C|1032
7MPJ|1|A1|U|1033
7MPJ|1|A1|U|1034
7MPJ|1|A1|G|1035
7MPJ|1|A1|A|1036
7MPJ|1|A1|C|1037
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain Bh
- Suppressor protein STM1
Coloring options: