HL_7MPJ_029
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 7MPJ|1|A1|G|1349, 7MPJ|1|A1|U|1353, 7MPJ|1|A1|G|1354, 7MPJ|1|A1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_029 not in the Motif Atlas
- Homologous match to HL_8C3A_029
- Geometric discrepancy: 0.445
- The information below is about HL_8C3A_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13577.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|A1|U|1347
7MPJ|1|A1|U|1348
7MPJ|1|A1|G|1349
7MPJ|1|A1|A|1350
7MPJ|1|A1|U|1351
7MPJ|1|A1|A|1352
7MPJ|1|A1|U|1353
7MPJ|1|A1|G|1354
7MPJ|1|A1|A|1355
7MPJ|1|A1|U|1356
7MPJ|1|A1|G|1357
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4-A
- Chain AE
- 60S ribosomal protein L6-A
- Chain AQ
- 60S ribosomal protein L18-A
Coloring options: