HL_7MPJ_052
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAGACAUAGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- 7MPJ|1|A1|A|2441, 7MPJ|1|A1|U|2501, 7MPJ|1|A1|U|2504, 7MPJ|1|A1|C|2507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_052 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.2822
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81100.2
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
7MPJ|1|A1|A|2439
7MPJ|1|A1|G|2440
7MPJ|1|A1|A|2441
7MPJ|1|A1|G|2442
7MPJ|1|A1|A|2443
7MPJ|1|A1|C|2444
7MPJ|1|A1|A|2445
7MPJ|1|A1|U|2501
7MPJ|1|A1|A|2502
7MPJ|1|A1|G|2503
7MPJ|1|A1|U|2504
7MPJ|1|A1|U|2505
7MPJ|1|A1|U|2506
7MPJ|1|A1|C|2507
7MPJ|1|A1|U|2508
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain Ai
- 60S ribosomal protein L36-A
- Chain BB
- 40S ribosomal protein S1-A
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