3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAACAGAAAUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MPJ_057 not in the Motif Atlas
Geometric match to HL_5J7L_188
Geometric discrepancy: 0.2546
The information below is about HL_5J7L_188
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11805.4
Basepair signature
cWW-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

7MPJ|1|A1|G|2672
7MPJ|1|A1|A|2673
7MPJ|1|A1|A|2674
7MPJ|1|A1|C|2675
7MPJ|1|A1|A|2676
7MPJ|1|A1|G|2677
7MPJ|1|A1|A|2678
7MPJ|1|A1|A|2679
7MPJ|1|A1|A|2680
7MPJ|1|A1|U|2681
7MPJ|1|A1|C|2682

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A3
5S ribosomal RNA; 5S rRNA
Chain AJ
60S ribosomal protein L11-A
Chain Bh
Suppressor protein STM1

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