HL_7MPJ_075
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAA(PSU)UGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 7MPJ|1|A4|U|74, 7MPJ|1|A4|U|81, 7MPJ|1|A4|C|84, 7MPJ|1|A4|U|86
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_075 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.3196
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51921.1
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|A4|U|69
7MPJ|1|A4|G|70
7MPJ|1|A4|A|71
7MPJ|1|A4|A|72
7MPJ|1|A4|PSU|73
7MPJ|1|A4|U|74
7MPJ|1|A4|G|75
7MPJ|1|A4|C|76
7MPJ|1|A4|A|77
7MPJ|1|A4|G|78
7MPJ|1|A4|A|79
7MPJ|1|A4|A|80
7MPJ|1|A4|U|81
7MPJ|1|A4|U|82
7MPJ|1|A4|C|83
7MPJ|1|A4|C|84
7MPJ|1|A4|G|85
7MPJ|1|A4|U|86
7MPJ|1|A4|G|87
7MPJ|1|A4|A|88
7MPJ|1|A4|A|89
Current chains
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: