Motif HL_51921.1 Version HL_51921.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-13 | 3-16 | 4-10 | 12-13 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_075 | 8CRE | 0.0000 | 3 | 4 | 5.8S rRNA | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | A | 81 | U | 82 | U | 83 | G | 85 | G | 87 | A | 88 | A | 89 | ncWW | tSH | tSs | tHS | ||
| 2 | HL_8P9A_187 | 8P9A | 0.4761 | 3 | AT | 5.8S rRNA | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | U | 81 | U | 82 | C | 83 | G | 85 | G | 87 | A | 88 | A | 89 | cWW | ntSH | ntSs | tHS | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAUUGCAGAUAUUCGUGAA | 1 |
| UGAAUUGCAGAAUUCCGUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUUGCAGAUAUUCGUGA | 1 |
| GAAUUGCAGAAUUCCGUGA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.48 | Avg 0.24 | Max 0.48
Coloring options: