HL_7MPJ_080

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7MPJ|1|B5|U|158, 7MPJ|1|B5|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_080 not in the Motif Atlas

Geometric match to HL_4V88_188

Geometric discrepancy: 0.1253

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7MPJ|1|B5|G|154
7MPJ|1|B5|U|155
7MPJ|1|B5|A|156
7MPJ|1|B5|A|157
7MPJ|1|B5|U|158
7MPJ|1|B5|U|159
7MPJ|1|B5|C|160

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BY

40S ribosomal protein S24-A