HL_7MPJ_087
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 7MPJ|1|B5|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_087 not in the Motif Atlas
- Geometric match to HL_4V88_195
- Geometric discrepancy: 0.0647
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7MPJ|1|B5|C|393
7MPJ|1|B5|C|394
7MPJ|1|B5|U|395
7MPJ|1|B5|G|396
7MPJ|1|B5|A|397
7MPJ|1|B5|G|398
7MPJ|1|B5|A|399
7MPJ|1|B5|A|400
7MPJ|1|B5|A|401
7MPJ|1|B5|C|402
7MPJ|1|B5|G|403
7MPJ|1|B5|G|404
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BI
- 40S ribosomal protein S8-A
- Chain BY
- 40S ribosomal protein S24-A
Coloring options: