HL_7MPJ_093

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUGUGG

Length

7 nucleotides

Bulged bases

7MPJ|1|B5|U|718, 7MPJ|1|B5|U|719, 7MPJ|1|B5|G|720, 7MPJ|1|B5|U|721, 7MPJ|1|B5|G|722

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_093 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2955

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7MPJ|1|B5|C|717
7MPJ|1|B5|U|718
7MPJ|1|B5|U|719
7MPJ|1|B5|G|720
7MPJ|1|B5|U|721
7MPJ|1|B5|G|722
7MPJ|1|B5|G|723

Current chains

Chain B5

18S rRNA

Nearby chains