HL_7MPJ_109

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_109 not in the Motif Atlas

Geometric match to HL_4V88_218

Geometric discrepancy: 0.0989

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7MPJ|1|B5|C|1501
7MPJ|1|B5|G|1502
7MPJ|1|B5|A|1503
7MPJ|1|B5|G|1504
7MPJ|1|B5|A|1505
7MPJ|1|B5|G|1506

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A