HL_7MPJ_114

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

7MPJ|1|A1|C|648

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_114 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0743

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7MPJ|1|A1|U|640
7MPJ|1|A1|C|641
7MPJ|1|A1|U|642
7MPJ|1|A1|U|643
7MPJ|1|A1|G|644
7MPJ|1|A1|1MA|645
7MPJ|1|A1|A|646
7MPJ|1|A1|A|647
7MPJ|1|A1|C|648
7MPJ|1|A1|A2M|649

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Aa

60S ribosomal protein L28

Chain Ae

60S ribosomal protein L32