HL_7MQ8_001

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACAGCCC

Length

8 nucleotides

Bulged bases

7MQ8|1|L0|C|680, 7MQ8|1|L0|C|683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MQ8|1|L0|G|678
7MQ8|1|L0|A|679
7MQ8|1|L0|C|680
7MQ8|1|L0|A|681
7MQ8|1|L0|G|682
7MQ8|1|L0|C|683
7MQ8|1|L0|C|684
7MQ8|1|L0|C|685

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LN

U3 small nucleolar RNA-associated protein 4 homolog

Chain LS

U3 small nucleolar RNA-associated protein 18 homolog

Chain SE

NHP2-like protein 1

Chain SY

Probable U3 small nucleolar RNA-associated protein 11