7MQ8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7MQ8_001 | 1/L0/678:685 | No text annotation | ||
| HL_7MQ8_006 | 1/L1/69:80 | No text annotation | geometric HL_361D_002 NA | |
| HL_7MQ8_031 | 1/L1/156:162 | GNRA related | homologous HL_8P9A_192 HL_34789.4 | |
| HL_7MQ8_009 | 1/L1/377:387 | No text annotation | ||
| HL_7MQ8_010 | 1/L1/418:423 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_7MQ8_033 | 1/L1/442:451 | No text annotation | ||
| HL_7MQ8_012 | 1/L1/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_7MQ8_013 | 1/L1/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7MQ8_014 | 1/L1/539:544 | No text annotation | homologous HL_4V88_198 NA | |
| HL_7MQ8_015 | 1/L1/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7MQ8_016 | 1/L1/610:615 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_7MQ8_018 | 1/L1/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7MQ8_019 | 1/L1/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_7MQ8_020 | 1/L1/1112:1121 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7MQ8_032 | 1/L1/1192:1197 | Mini UNCG | geometric HL_8VMB_002 HL_90436.3 | |
| HL_7MQ8_026 | 1/L1/1658:1666 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7MQ8_002 | No text annotation | ||
| HL_7MQ8_003 | No text annotation | ||
| HL_7MQ8_004 | No text annotation | ||
| HL_7MQ8_005 | No text annotation | ||
| HL_7MQ8_007 | No text annotation | ||
| HL_7MQ8_008 | Mini UNCG | ||
| HL_7MQ8_011 | No text annotation | ||
| HL_7MQ8_017 | No text annotation | ||
| HL_7MQ8_021 | Anticodon loop related | ||
| HL_7MQ8_022 | GNRA | ||
| HL_7MQ8_023 | No text annotation | ||
| HL_7MQ8_024 | GNRA | ||
| HL_7MQ8_025 | No text annotation | ||
| HL_7MQ8_027 | No text annotation | ||
| HL_7MQ8_028 | Mini UNCG | ||
| HL_7MQ8_029 | No text annotation | ||
| HL_7MQ8_030 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7MQ8_001 | 1/L0/451:453, 1/L0/670:671 | No text annotation | ||
| IL_7MQ8_002 | 1/L0/463:464, 1/L0/603:605 | No text annotation | ||
| IL_7MQ8_003 | 1/L0/676:677, 1/L0/686:688 | No text annotation | ||
| IL_7MQ8_097 | 1/L0/717:718, 1/L0/751:753 | No text annotation | ||
| IL_7MQ8_006 | 1/L0/728:730, 1/L0/738:740 | No text annotation | ||
| IL_7MQ8_007 | 1/L0/760:761, 1/L0/797:800 | No text annotation | ||
| IL_7MQ8_008 | 1/L0/817:819, 1/L2/71:72 | No text annotation | ||
| IL_7MQ8_009 | 1/L0/1415:1417, 1/L2/52:54 | No text annotation | ||
| IL_7MQ8_010 | 1/L0/1417:1419, 1/L2/50:52 | No text annotation | ||
| IL_7MQ8_011 | 1/L0/1420:1422, 1/L2/47:49 | No text annotation | ||
| IL_7MQ8_012 | 1/L1/23:25, 1/L1/649:651 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7MQ8_013 | 1/L1/34:36, 1/L1/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_7MQ8_014 | 1/L1/37:40, 1/L1/514:518 | No text annotation | ||
| IL_7MQ8_015 | 1/L1/57:62, 1/L1/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7MQ8_016 | 1/L1/63:68, 1/L1/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7MQ8_017 | 1/L1/108:110, 1/L1/351:353 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_01003.3 | |
| IL_7MQ8_089 | 1/L1/108:115, 1/L1/348:353 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_7MQ8_018 | 1/L1/110:112, 1/L1/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.3 | |
| IL_7MQ8_019 | 1/L1/112:115, 1/L1/348:349 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_7MQ8_020 | 1/L1/116:121, 1/L1/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_7MQ8_021 | 1/L1/145:151, 1/L1/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_7MQ8_022 | 1/L1/152:154, 1/L1/164:166 | Isolated cWH basepair | geometric IL_3R1C_032 NA | |
| IL_7MQ8_023 | 1/L1/188:192, 1/L1/207:211 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.2 | |
| IL_7MQ8_024 | 1/L1/216:219, 1/L1/302:309 | No text annotation | ||
| IL_7MQ8_031 | 1/L1/312:314, 1/L1/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_7MQ8_032 | 1/L1/317:319, 1/L1/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_7MQ8_034 | 1/L1/359:364, 1/L1/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7MQ8_035 | 1/L1/366:371, 1/L1/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_7MQ8_036 | 1/L1/417:418, 1/L1/423:425 | Single bulged C | geometric IL_7KGA_004 IL_05642.2 | |
| IL_7MQ8_037 | 1/L1/437:439, 1/L1/454:456 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_7MQ8_038 | 1/L1/459:461, 1/L1/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_7MQ8_039 | 1/L1/491:495, 1/L1/508:509 | C-loop | geometric IL_5J7L_018 NA | |
| IL_7MQ8_040 | 1/L1/495:496, 1/L1/506:508 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7MQ8_041 | 1/L1/530:531, 1/L1/553:555 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_7MQ8_042 | 1/L1/534:535, 1/L1/548:550 | No text annotation | ||
| IL_7MQ8_043 | 1/L1/535:537, 1/L1/546:548 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.3 | |
| IL_7MQ8_044 | 1/L1/563:565, 1/L1/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_7MQ8_045 | 1/L1/566:569, 1/L1/581:584 | Tandem non-canonical cWW pairs | geometric IL_402D_001 NA | |
| IL_7MQ8_047 | 1/L1/673:675, 1/L1/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7MQ8_048 | 1/L1/676:680, 1/L1/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7MQ8_049 | 1/L1/922:923, 1/L1/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7MQ8_099 | 1/L1/925:926, 1/L1/1015:1017 | Single bulged U | geometric IL_8P9A_281 IL_97561.3 | |
| IL_7MQ8_051 | 1/L1/928:931, 1/L1/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7MQ8_052 | 1/L1/931:935, 1/L1/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_7MQ8_053 | 1/L1/942:945, 1/L1/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7MQ8_054 | 1/L1/952:956, 1/L1/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_7MQ8_055 | 1/L1/1092:1096, 1/L1/1136:1139 | No text annotation | geometric IL_2OE8_002 IL_34618.2 | |
| IL_7MQ8_056 | 1/L1/1098:1101, 1/L1/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7MQ8_057 | 1/L1/1101:1103, 1/L1/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7MQ8_058 | 1/L1/1108:1110, 1/L1/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7MQ8_060 | 1/L1/1214:1217, 1/L1/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_7MQ8_061 | 1/L1/1230:1232, 1/L1/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7MQ8_073 | 1/L1/1714:1716, 1/L1/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7MQ8_074 | 1/L1/1717:1720, 1/L1/1813:1816 | Tandem non-canonical cWW pairs | geometric IL_5LQO_002 IL_15225.2 | |
| IL_7MQ8_092 | 1/L1/1717:1722, 1/L1/1812:1816 | No text annotation | ||
| IL_7MQ8_094 | 1/L2/79:85, 1/L2/210:213 | No text annotation | ||
| IL_7MQ8_082 | 1/L2/86:94, 1/L2/205:209 | No text annotation | ||
| IL_7MQ8_083 | 1/L2/110:114, 1/L2/158:165 | No text annotation | ||
| IL_7MQ8_084 | 1/L2/114:118, 1/L2/155:158 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7MQ8_004 | No text annotation | ||
| IL_7MQ8_098 | No text annotation | ||
| IL_7MQ8_005 | No text annotation | ||
| IL_7MQ8_025 | No text annotation | ||
| IL_7MQ8_026 | Tandem non-canonical cWW pairs | ||
| IL_7MQ8_027 | No text annotation | ||
| IL_7MQ8_028 | Isolated non-canonical cWW pair | ||
| IL_7MQ8_029 | No text annotation | ||
| IL_7MQ8_030 | No text annotation | ||
| IL_7MQ8_033 | Single bulged U | ||
| IL_7MQ8_046 | No text annotation | ||
| IL_7MQ8_090 | Isolated non-canonical cWW pair | ||
| IL_7MQ8_050 | Tandem non-canonical cWW pairs | ||
| IL_7MQ8_059 | Multiple bulged bases | ||
| IL_7MQ8_062 | Isolated non-canonical cWW pair | ||
| IL_7MQ8_063 | No text annotation | ||
| IL_7MQ8_091 | No text annotation | ||
| IL_7MQ8_064 | No text annotation | ||
| IL_7MQ8_065 | No text annotation | ||
| IL_7MQ8_066 | Single bulged A | ||
| IL_7MQ8_067 | Single bulged U | ||
| IL_7MQ8_068 | Single bulged A | ||
| IL_7MQ8_069 | Isolated cWH basepair | ||
| IL_7MQ8_070 | Tandem non-canonical cWW pairs | ||
| IL_7MQ8_071 | No text annotation | ||
| IL_7MQ8_072 | Isolated non-canonical cWW pair | ||
| IL_7MQ8_075 | Single stack bend | ||
| IL_7MQ8_076 | Isolated non-canonical cWW pair | ||
| IL_7MQ8_077 | Double sheared | ||
| IL_7MQ8_078 | Isolated non-canonical cWW pair | ||
| IL_7MQ8_079 | Triple sheared | ||
| IL_7MQ8_093 | No text annotation | ||
| IL_7MQ8_100 | No text annotation | ||
| IL_7MQ8_080 | No text annotation | ||
| IL_7MQ8_081 | No text annotation | ||
| IL_7MQ8_095 | No text annotation | ||
| IL_7MQ8_085 | No text annotation | ||
| IL_7MQ8_096 | No text annotation | ||
| IL_7MQ8_086 | No text annotation | ||
| IL_7MQ8_087 | No text annotation | ||
| IL_7MQ8_088 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7MQ8_008 | 1/L0/454:459, 1/L0/609:610, 1/L0/664:669 | No text annotation | ||
| J3_7MQ8_001 | 1/L1/682:684, 1/L1/918:922, 1/L1/1022:1023 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7MQ8_012 | 1/L1/682:684, 1/L1/918:923, 1/L1/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_7MQ8_002 | 1/L1/938:941, 1/L1/985:993, 1/L1/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7MQ8_011 | 1/L1/1218:1221, 1/L1/1645:1651, 1/L1/1673:1680 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_7MQ8_003 | 1/L1/1225:1228, 1/L1/1530:1532, 1/L1/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_7MQ8_007 | 1/L2/105:110, 1/L2/165:168, 1/L2/193:194 | No text annotation | ||
| J5_7MQ8_001 | 1/L1/30:34, 1/L1/521:527, 1/L1/558:563, 1/L1/592:595, 1/L1/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7MQ8_002 | 1/L1/30:34, 1/L1/521:527, 1/L1/558:565, 1/L1/585:595, 1/L1/641:644 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7MQ8_009 | No text annotation | ||
| J3_7MQ8_010 | No text annotation | ||
| J3_7MQ8_004 | No text annotation | ||
| J3_7MQ8_005 | No text annotation | ||
| J3_7MQ8_006 | No text annotation |
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