HL_7MQ8_010

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGGUU

Length

6 nucleotides

Bulged bases

7MQ8|1|L1|G|420, 7MQ8|1|L1|G|421, 7MQ8|1|L1|U|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ8_010 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1939

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7MQ8|1|L1|A|418
7MQ8|1|L1|G|419
7MQ8|1|L1|G|420
7MQ8|1|L1|G|421
7MQ8|1|L1|U|422
7MQ8|1|L1|U|423

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4, X isoform

Chain L9

40S ribosomal protein S9

Chain NC

Neuroguidin

Chain SG

U3 small nucleolar RNA-interacting protein 2